PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002675P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 284aa    MW: 30999.2 Da    PI: 5.4004
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002675P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.5e-2976134259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+ver++ dp++++itY+ eHnh+
  MELO3C002675P1  76 SDSWAWRKYGQKPIKGSPYPRAYYRCSSSkGCPARKQVERNRLDPTTLVITYSCEHNHS 134
                     69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-3069135IPR003657WRKY domain
SuperFamilySSF1182909.94E-2572135IPR003657WRKY domain
SMARTSM007741.4E-3375135IPR003657WRKY domain
PROSITE profilePS5081131.27276136IPR003657WRKY domain
PfamPF031061.6E-2477133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDDVSFNHNN HHQFYSSDPF EDSDELKPTP DSPAPSSTIA AAATKKGRRG MKKKIISVKI  60
NGDSPRNSSG SATPPSDSWA WRKYGQKPIK GSPYPRAYYR CSSSKGCPAR KQVERNRLDP  120
TTLVITYSCE HNHSGPVSRN NNNNNNQNNQ IVLMKPGSPE TVAVHQEPEV EEKFVEIGGE  180
ESLITADEFS WFGEMETTSS TVLESSIFSG RASTGLVDHS ISSDVAMLFP MGDDDVDESL  240
FADLGELPEC SLVFRRGGGR GLPVDEQPAA AQRRITPWCG TTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-18761361574WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840110.0GU984011.1 Cucumis sativus WRKY protein (WRKY6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443489.10.0PREDICTED: probable WRKY transcription factor 65 isoform X1
SwissprotQ9LP561e-68WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLE7CEW01e-175E7CEW0_CUCSA; Uncharacterized protein
STRINGVIT_10s0003g01600.t011e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-63WRKY DNA-binding protein 65